IL_6P4H_073

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6P4H|1|2|A|1489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_073 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1623

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6P4H|1|2|C|1337
6P4H|1|2|G|1338
*
6P4H|1|2|C|1488
6P4H|1|2|A|1489
6P4H|1|2|G|1490

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain D

uS5

Chain E

uS3

Chain R

uS9

Chain V

uS10

Chain e

eS29