IL_6P4H_083

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6P4H|1|2|C|1701, 6P4H|1|2|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_083 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2068

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6P4H|1|2|C|1700
6P4H|1|2|C|1701
6P4H|1|2|G|1702
*
6P4H|1|2|C|1833
6P4H|1|2|A|1834
6P4H|1|2|A|1835
6P4H|1|2|G|1836

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain P

uS11

Chain b

eS26