IL_6P4H_084

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_084 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0926

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6P4H|1|2|G|1702
6P4H|1|2|C|1703
6P4H|1|2|C|1704
6P4H|1|2|C|1705
*
6P4H|1|2|G|1829
6P4H|1|2|U|1830
6P4H|1|2|A|1831
6P4H|1|2|A|1832
6P4H|1|2|C|1833

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain n

eL41