IL_6P4H_093

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_093 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2255

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6P4H|1|2|C|1742
6P4H|1|2|G|1743
6P4H|1|2|G|1744
6P4H|1|2|A|1745
6P4H|1|2|U|1746
*
6P4H|1|2|A|1788
6P4H|1|2|G|1789
6P4H|1|2|A|1790
6P4H|1|2|A|1791
6P4H|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain J

eS8