IL_6P4H_099

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAC*GGCCC

Length

9 nucleotides

Bulged bases

6P4H|1|2|C|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_099 not in the Motif Atlas

Geometric match to IL_5J7L_327

Geometric discrepancy: 0.3588

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6P4H|1|2|G|534
6P4H|1|2|G|535
6P4H|1|2|A|536
6P4H|1|2|C|537
*
6P4H|1|2|G|546
6P4H|1|2|G|547
6P4H|1|2|C|548
6P4H|1|2|C|549
6P4H|1|2|C|550

Current chains

Chain 2

18S rRNA

Nearby chains

Chain f

eS30