IL_6P4H_105

3D structure

PDB id

6P4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian small ribosomal subunit in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GACAGGAUUG*CUCGAUUC

Length

18 nucleotides

Bulged bases

6P4H|1|2|G|1285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P4H_105 not in the Motif Atlas

Homologous match to IL_8P9A_470

Geometric discrepancy: 0.2917

The information below is about IL_8P9A_470

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28304.1

Basepair signature

cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6P4H|1|2|G|1281
6P4H|1|2|A|1282
6P4H|1|2|C|1283
6P4H|1|2|A|1284
6P4H|1|2|G|1285
6P4H|1|2|G|1286
6P4H|1|2|A|1287
6P4H|1|2|U|1288
6P4H|1|2|U|1289
6P4H|1|2|G|1290
*
6P4H|1|2|C|1309
6P4H|1|2|U|1310
6P4H|1|2|C|1311
6P4H|1|2|G|1312
6P4H|1|2|A|1313
6P4H|1|2|U|1314
6P4H|1|2|U|1315
6P4H|1|2|C|1316

Current chains

Chain 2

18S rRNA

Nearby chains

Chain L

eS10

Chain N

eS12

Chain e

eS29

Chain g

eS31