IL_6P5I_030

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUACA*UGUAAU

Length

11 nucleotides

Bulged bases

6P5I|1|2|A|555

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_030 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3408

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5I|1|2|A|529
6P5I|1|2|U|530
6P5I|1|2|A|531
6P5I|1|2|C|532
6P5I|1|2|A|533
*
6P5I|1|2|U|551
6P5I|1|2|G|552
6P5I|1|2|U|553
6P5I|1|2|A|554
6P5I|1|2|A|555
6P5I|1|2|U|556

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

uS4

Chain f

eS30