IL_6P5I_041

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGC*GCCCG

Length

11 nucleotides

Bulged bases

6P5I|1|2|C|753

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_041 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3828

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6P5I|1|2|C|750
6P5I|1|2|G|751
6P5I|1|2|G|752
6P5I|1|2|C|753
6P5I|1|2|G|754
6P5I|1|2|C|755
*
6P5I|1|2|G|789
6P5I|1|2|C|790
6P5I|1|2|C|791
6P5I|1|2|C|792
6P5I|1|2|G|793

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6