IL_6P5I_044

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUU*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_044 not in the Motif Atlas

Homologous match to IL_4V88_425

Geometric discrepancy: 0.2281

The information below is about IL_4V88_425

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53064.1

Basepair signature

cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6P5I|1|2|G|807
6P5I|1|2|A|808
6P5I|1|2|A|809
6P5I|1|2|A|810
6P5I|1|2|A|811
6P5I|1|2|A|812
6P5I|1|2|A|813
6P5I|1|2|U|814
6P5I|1|2|U|815
*
6P5I|1|2|A|849
6P5I|1|2|C|850
6P5I|1|2|C|851
6P5I|1|2|G|852
6P5I|1|2|C|853
6P5I|1|2|A|854
6P5I|1|2|G|855
6P5I|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8