IL_6P5I_051

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6P5I|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1403

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6P5I|1|2|G|952
6P5I|1|2|C|953
6P5I|1|2|U|954
6P5I|1|2|A|955
6P5I|1|2|G|956
*
6P5I|1|2|C|967
6P5I|1|2|U|968
6P5I|1|2|U|969
6P5I|1|2|G|970
6P5I|1|2|G|971
6P5I|1|2|A|972
6P5I|1|2|C|973
6P5I|1|2|C|974

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain C

eS1

Chain P

uS11