IL_6P5I_075

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6P5I|1|2|C|1403, 6P5I|1|2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_075 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.1891

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6P5I|1|2|A|1402
6P5I|1|2|C|1403
6P5I|1|2|U|1404
6P5I|1|2|A|1405
*
6P5I|1|2|U|1441
6P5I|1|2|U|1442
6P5I|1|2|C|1443
6P5I|1|2|U|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain h

RACK1