IL_6P5I_138
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUC*GCGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_138 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3144
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6P5I|1|5|G|1425
6P5I|1|5|G|1426
6P5I|1|5|A|1427
6P5I|1|5|U|1428
6P5I|1|5|C|1429
*
6P5I|1|5|G|1455
6P5I|1|5|C|1456
6P5I|1|5|G|1457
6P5I|1|5|C|1458
6P5I|1|5|A|1459
6P5I|1|5|C|1460
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AQ
- eL18
- Chain Ab
- eL29
Coloring options: