IL_6P5I_167
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6P5I|1|5|C|1935, 6P5I|1|5|A|2041
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_167 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1794
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6P5I|1|5|G|1933
6P5I|1|5|A|1934
6P5I|1|5|C|1935
6P5I|1|5|C|1936
6P5I|1|5|C|1937
6P5I|1|5|C|1938
6P5I|1|5|A|1939
6P5I|1|5|G|1940
6P5I|1|5|A|1941
6P5I|1|5|A|1942
6P5I|1|5|A|1943
6P5I|1|5|A|1944
*
6P5I|1|5|U|2038
6P5I|1|5|G|2039
6P5I|1|5|A|2040
6P5I|1|5|A|2041
6P5I|1|5|A|2042
6P5I|1|5|A|2043
6P5I|1|5|U|2044
6P5I|1|5|G|2045
6P5I|1|5|G|2046
6P5I|1|5|A|2047
6P5I|1|5|U|2048
6P5I|1|5|G|2049
6P5I|1|5|G|2050
6P5I|1|5|C|2051
6P5I|1|5|G|2052
6P5I|1|5|C|2053
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- uL3
- Chain AI
- uL16
- Chain AO
- uL13
- Chain AS
- eL20
- Chain Af
- eL33
- Chain Am
- eL40
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