IL_6P5I_204

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6P5I|1|5|A|3785, 6P5I|1|5|C|3791, 6P5I|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_204 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0758

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6P5I|1|5|C|3781
6P5I|1|5|C|3782
6P5I|1|5|A|3783
6P5I|1|5|A|3784
6P5I|1|5|A|3785
6P5I|1|5|U|3786
6P5I|1|5|G|3787
6P5I|1|5|C|3788
6P5I|1|5|C|3789
6P5I|1|5|U|3790
6P5I|1|5|C|3791
6P5I|1|5|G|3792
*
6P5I|1|5|C|3808
6P5I|1|5|G|3809
6P5I|1|5|C|3810
6P5I|1|5|G|3811

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain An

eL41