IL_6P5I_212

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGUAGAAUAA*UACU

Length

17 nucleotides

Bulged bases

6P5I|1|5|A|3965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_212 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.3729

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6P5I|1|5|A|3954
6P5I|1|5|G|3955
6P5I|1|5|G|3956
6P5I|1|5|U|3957
6P5I|1|5|G|3958
6P5I|1|5|U|3959
6P5I|1|5|A|3960
6P5I|1|5|G|3961
6P5I|1|5|A|3962
6P5I|1|5|A|3963
6P5I|1|5|U|3964
6P5I|1|5|A|3965
6P5I|1|5|A|3966
*
6P5I|1|5|U|4055
6P5I|1|5|A|4056
6P5I|1|5|C|4057
6P5I|1|5|U|4058

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AK

uL1