IL_6P5I_239

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6P5I|1|5|U|4634, 6P5I|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_239 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2341

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6P5I|1|5|U|4632
6P5I|1|5|G|4633
6P5I|1|5|U|4634
6P5I|1|5|A|4635
6P5I|1|5|U|4636
6P5I|1|5|G|4637
*
6P5I|1|5|C|4662
6P5I|1|5|G|4663
6P5I|1|5|A|4664
6P5I|1|5|A|4665
6P5I|1|5|G|4666

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AW

eL24

Chain Ad

eL31