IL_6P5I_262
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_262 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.178
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6P5I|1|7|G|71
6P5I|1|7|U|72
6P5I|1|7|U|73
6P5I|1|7|A|74
6P5I|1|7|G|75
6P5I|1|7|U|76
6P5I|1|7|A|77
6P5I|1|7|C|78
*
6P5I|1|7|G|98
6P5I|1|7|G|99
6P5I|1|7|A|100
6P5I|1|7|A|101
6P5I|1|7|U|102
6P5I|1|7|A|103
6P5I|1|7|C|104
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- uL18
- Chain AF
- uL30
- Chain AI
- uL16
- Chain AS
- eL20
- Chain AT
- eL21
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