IL_6P5I_271
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCC*GAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_271 not in the Motif Atlas
- Geometric match to IL_5J7L_361
- Geometric discrepancy: 0.2689
- The information below is about IL_5J7L_361
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6P5I|1|2|C|927
6P5I|1|2|G|928
6P5I|1|2|G|929
6P5I|1|2|C|930
6P5I|1|2|C|931
*
6P5I|1|2|G|1010
6P5I|1|2|A|1011
6P5I|1|2|A|1012
6P5I|1|2|U|1013
6P5I|1|2|G|1014
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain Ac
- eL30
- Chain C
- eS1
- Chain O
- uS15
- Chain c
- eS27
Coloring options: