IL_6P5I_276

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUAC*GCGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_276 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3352

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6P5I|1|2|C|1558
6P5I|1|2|C|1559
6P5I|1|2|U|1560
6P5I|1|2|A|1561
6P5I|1|2|C|1562
*
6P5I|1|2|G|1573
6P5I|1|2|C|1574
6P5I|1|2|G|1575
6P5I|1|2|G|1576
6P5I|1|2|G|1577

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain U

eS19

Chain e

eS29