IL_6P5I_279
3D structure
- PDB id
- 6P5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGCC*GGCGCG
- Length
- 11 nucleotides
- Bulged bases
- 6P5I|1|5|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5I_279 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.2811
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6P5I|1|5|C|125
6P5I|1|5|C|126
6P5I|1|5|G|127
6P5I|1|5|C|128
6P5I|1|5|C|129
*
6P5I|1|5|G|139
6P5I|1|5|G|140
6P5I|1|5|C|141
6P5I|1|5|G|142
6P5I|1|5|C|143
6P5I|1|5|G|144
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AG
- eL8
- Chain AN
- eL15
- Chain AX
- eL23
- Chain Ah
- eL35
Coloring options: