IL_6P5I_281

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAG*CACCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_281 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3173

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6P5I|1|5|C|460
6P5I|1|5|G|461
6P5I|1|5|G|462
6P5I|1|5|A|463
6P5I|1|5|G|464
*
6P5I|1|5|C|691
6P5I|1|5|A|692
6P5I|1|5|C|693
6P5I|1|5|C|694
6P5I|1|5|G|695

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Ar

eL28