IL_6P5I_295

3D structure

PDB id

6P5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6P5I|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5I_295 not in the Motif Atlas

Homologous match to IL_8CRE_400

Geometric discrepancy: 0.1084

The information below is about IL_8CRE_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6P5I|1|2|G|145
6P5I|1|2|G|146
6P5I|1|2|A|147
6P5I|1|2|U|148
6P5I|1|2|A|149
6P5I|1|2|A|150
6P5I|1|2|C|151
*
6P5I|1|2|G|167
6P5I|1|2|C|168
6P5I|1|2|U|169
6P5I|1|2|A|170
6P5I|1|2|A|171
6P5I|1|2|U|172
6P5I|1|2|A|173
6P5I|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

eS6

Chain Z

eS24