IL_6P5J_011

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCCUUU*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_011 not in the Motif Atlas

Homologous match to IL_4V88_393

Geometric discrepancy: 0.3042

The information below is about IL_4V88_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6P5J|1|2|U|116
6P5J|1|2|C|117
6P5J|1|2|C|118
6P5J|1|2|U|119
6P5J|1|2|U|120
6P5J|1|2|U|121
*
6P5J|1|2|A|343
6P5J|1|2|U|344
6P5J|1|2|U|345
6P5J|1|2|C|346
6P5J|1|2|G|347

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain J

eS8