IL_6P5J_022

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGGCAAGUC*GCU

Length

13 nucleotides

Bulged bases

6P5J|1|2|U|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|A|599
6P5J|1|2|G|600
6P5J|1|2|G|601
6P5J|1|2|G|602
6P5J|1|2|C|603
6P5J|1|2|A|604
6P5J|1|2|A|605
6P5J|1|2|G|606
6P5J|1|2|U|607
6P5J|1|2|C|608
*
6P5J|1|2|G|635
6P5J|1|2|C|636
6P5J|1|2|U|637

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5

Chain E

uS3

Chain K

uS4

Chain f

eS30