IL_6P5J_030

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAAAAUUA*UACCGCAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|G|807
6P5J|1|2|A|808
6P5J|1|2|A|809
6P5J|1|2|A|810
6P5J|1|2|A|811
6P5J|1|2|A|812
6P5J|1|2|A|813
6P5J|1|2|U|814
6P5J|1|2|U|815
6P5J|1|2|A|816
*
6P5J|1|2|U|848
6P5J|1|2|A|849
6P5J|1|2|C|850
6P5J|1|2|C|851
6P5J|1|2|G|852
6P5J|1|2|C|853
6P5J|1|2|A|854
6P5J|1|2|G|855
6P5J|1|2|C|856

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain M

uS17

Chain X

uS8