IL_6P5J_031

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAGUGUUCAAAGCAG*CUGGAU

Length

22 nucleotides

Bulged bases

6P5J|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|A|816
6P5J|1|2|G|817
6P5J|1|2|A|818
6P5J|1|2|G|819
6P5J|1|2|U|820
6P5J|1|2|G|821
6P5J|1|2|U|822
6P5J|1|2|U|823
6P5J|1|2|C|824
6P5J|1|2|A|825
6P5J|1|2|A|826
6P5J|1|2|A|827
6P5J|1|2|G|828
6P5J|1|2|C|829
6P5J|1|2|A|830
6P5J|1|2|G|831
*
6P5J|1|2|C|843
6P5J|1|2|U|844
6P5J|1|2|G|845
6P5J|1|2|G|846
6P5J|1|2|A|847
6P5J|1|2|U|848

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

eS4

Chain K

uS4

Chain Z

eS24