IL_6P5J_039

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUUCGAAG*CGUAGUU

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|A|1042
6P5J|1|2|G|1043
6P5J|1|2|G|1044
6P5J|1|2|U|1045
6P5J|1|2|U|1046
6P5J|1|2|C|1047
6P5J|1|2|G|1048
6P5J|1|2|A|1049
6P5J|1|2|A|1050
6P5J|1|2|G|1051
*
6P5J|1|2|C|1067
6P5J|1|2|G|1068
6P5J|1|2|U|1069
6P5J|1|2|A|1070
6P5J|1|2|G|1071
6P5J|1|2|U|1072
6P5J|1|2|U|1073

Current chains

Chain 2

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AA

uL2

Chain Ap

eL43

Chain P

uS11

Chain b

eS26