IL_6P5J_057

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CGGC

Length

7 nucleotides

Bulged bases

6P5J|1|2|G|1428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_057 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.5874

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6P5J|1|2|G|1411
6P5J|1|2|C|1412
6P5J|1|2|G|1413
*
6P5J|1|2|C|1427
6P5J|1|2|G|1428
6P5J|1|2|G|1429
6P5J|1|2|C|1430

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain U

eS19