IL_6P5J_061

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_061 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1543

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6P5J|1|2|G|1604
6P5J|1|2|G|1605
6P5J|1|2|G|1606
6P5J|1|2|A|1607
6P5J|1|2|U|1608
6P5J|1|2|C|1609
6P5J|1|2|G|1610
*
6P5J|1|2|C|1629
6P5J|1|2|A|1630
6P5J|1|2|U|1631
6P5J|1|2|G|1632
6P5J|1|2|A|1633
6P5J|1|2|A|1634
6P5J|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

uS13

Chain U

eS19