IL_6P5J_072

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAUC*GAGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_072 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3354

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6P5J|1|2|C|1742
6P5J|1|2|G|1743
6P5J|1|2|G|1744
6P5J|1|2|A|1745
6P5J|1|2|U|1746
6P5J|1|2|C|1747
*
6P5J|1|2|G|1787
6P5J|1|2|A|1788
6P5J|1|2|G|1789
6P5J|1|2|A|1790
6P5J|1|2|A|1791
6P5J|1|2|G|1792

Current chains

Chain 2

18S rRNA

Nearby chains

Chain AW

eL24

Chain H

eS6

Chain J

eS8