IL_6P5J_075
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUC*GUC
- Length
- 7 nucleotides
- Bulged bases
- 6P5J|1|5|U|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6P5J_075 not in the Motif Atlas
- Geometric match to IL_5TBW_079
- Geometric discrepancy: 0.2155
- The information below is about IL_5TBW_079
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6P5J|1|5|G|11
6P5J|1|5|A|12
6P5J|1|5|U|13
6P5J|1|5|C|14
*
6P5J|1|8|G|143
6P5J|1|8|U|144
6P5J|1|8|C|145
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain AG
- eL8
- Chain AN
- eL15
- Chain AX
- eL23
Coloring options: