IL_6P5J_081

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AAAUGU

Length

8 nucleotides

Bulged bases

6P5J|1|5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_081 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.1802

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6P5J|1|5|A|121
6P5J|1|5|U|122
*
6P5J|1|5|A|147
6P5J|1|5|A|148
6P5J|1|5|A|149
6P5J|1|5|U|150
6P5J|1|5|G|151
6P5J|1|5|U|152

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain AG

eL8

Chain AN

eL15