IL_6P5J_103

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

6P5J|1|5|G|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_103 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.3631

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6P5J|1|5|C|709
6P5J|1|5|G|710
*
6P5J|1|5|C|1286
6P5J|1|5|G|1287
6P5J|1|5|G|1288

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AE

eL6

Chain Af

eL33