IL_6P5J_105

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGG*CG

Length

7 nucleotides

Bulged bases

6P5J|1|5|G|729, 6P5J|1|5|G|730

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_105 not in the Motif Atlas

Geometric match to IL_2QWY_008

Geometric discrepancy: 0.3707

The information below is about IL_2QWY_008

Detailed Annotation

Single stack bend with SAM intercalation

Broad Annotation

Single stack bend with SAM intercalation

Motif group

IL_38710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6P5J|1|5|C|727
6P5J|1|5|U|728
6P5J|1|5|G|729
6P5J|1|5|G|730
6P5J|1|5|G|731
*
6P5J|1|5|C|938
6P5J|1|5|G|939

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AF

uL30

Chain AM

L14e

Chain AS

eL20