IL_6P5J_108

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGGCC*GGUGUUACAGC

Length

21 nucleotides

Bulged bases

6P5J|1|5|G|748, 6P5J|1|5|C|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|G|745
6P5J|1|5|A|746
6P5J|1|5|A|747
6P5J|1|5|G|748
6P5J|1|5|G|749
6P5J|1|5|U|750
6P5J|1|5|G|751
6P5J|1|5|G|752
6P5J|1|5|C|753
6P5J|1|5|C|754
*
6P5J|1|5|G|908
6P5J|1|5|G|909
6P5J|1|5|U|910
6P5J|1|5|G|911
6P5J|1|5|U|912
6P5J|1|5|U|913
6P5J|1|5|A|914
6P5J|1|5|C|915
6P5J|1|5|A|916
6P5J|1|5|G|917
6P5J|1|5|C|918

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AM

L14e

Chain AS

eL20