IL_6P5J_110

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCACCCC*GGGGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|C|1076
6P5J|1|5|C|1077
6P5J|1|5|A|1078
6P5J|1|5|C|1079
6P5J|1|5|C|1080
6P5J|1|5|C|1081
6P5J|1|5|C|1082
*
6P5J|1|5|G|1217
6P5J|1|5|G|1218
6P5J|1|5|G|1219
6P5J|1|5|G|1233
6P5J|1|5|G|1234

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AE

eL6

Chain Ab

eL29