IL_6P5J_148

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUG*CUCAC

Length

42 nucleotides

Bulged bases

6P5J|1|5|G|1981

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|G|1969
6P5J|1|5|A|1970
6P5J|1|5|U|1971
6P5J|1|5|G|1972
6P5J|1|5|G|1973
6P5J|1|5|U|1974
6P5J|1|5|G|1975
6P5J|1|5|G|1976
6P5J|1|5|C|1977
6P5J|1|5|C|1978
6P5J|1|5|A|1979
6P5J|1|5|U|1980
6P5J|1|5|G|1981
6P5J|1|5|G|1982
6P5J|1|5|A|1983
6P5J|1|5|A|1984
6P5J|1|5|G|1985
6P5J|1|5|U|1986
6P5J|1|5|C|1987
6P5J|1|5|G|1988
6P5J|1|5|G|1989
6P5J|1|5|A|1990
6P5J|1|5|A|1991
6P5J|1|5|U|1992
6P5J|1|5|C|1993
6P5J|1|5|C|1994
6P5J|1|5|G|1995
6P5J|1|5|C|1996
6P5J|1|5|U|1997
6P5J|1|5|A|1998
6P5J|1|5|A|1999
6P5J|1|5|G|2000
6P5J|1|5|G|2001
6P5J|1|5|A|2002
6P5J|1|5|G|2003
6P5J|1|5|U|2004
6P5J|1|5|G|2005
*
6P5J|1|5|C|2014
6P5J|1|5|U|2015
6P5J|1|5|C|2016
6P5J|1|5|A|2017
6P5J|1|5|C|2018

Current chains

Chain 5

28S rRNA

Nearby chains