IL_6P5J_182

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

6P5J|1|5|A|3901, 6P5J|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_182 not in the Motif Atlas

Homologous match to IL_8C3A_097

Geometric discrepancy: 0.1011

The information below is about IL_8C3A_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6P5J|1|5|G|3900
6P5J|1|5|A|3901
6P5J|1|5|A|3902
*
6P5J|1|5|U|4558
6P5J|1|5|A|4559
6P5J|1|5|C|4560
6P5J|1|5|C|4561

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AB

uL3

Chain AP

uL22