IL_6P5J_186

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_186 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2392

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6P5J|1|5|A|3943
6P5J|1|5|G|3944
6P5J|1|5|A|3945
*
6P5J|1|5|U|4068
6P5J|1|5|U|4069
6P5J|1|5|U|4070

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Ai

eL36

Chain C

eS1