IL_6P5J_187

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGCCGGUGAAAUACC

Length

20 nucleotides

Bulged bases

6P5J|1|5|A|4046, 6P5J|1|5|A|4047

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|G|3969
6P5J|1|5|G|3970
6P5J|1|5|G|3971
6P5J|1|5|A|3972
6P5J|1|5|G|3973
*
6P5J|1|5|C|4038
6P5J|1|5|G|4039
6P5J|1|5|C|4040
6P5J|1|5|C|4041
6P5J|1|5|G|4042
6P5J|1|5|G|4043
6P5J|1|5|U|4044
6P5J|1|5|G|4045
6P5J|1|5|A|4046
6P5J|1|5|A|4047
6P5J|1|5|A|4048
6P5J|1|5|U|4049
6P5J|1|5|A|4050
6P5J|1|5|C|4051
6P5J|1|5|C|4052

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 1

IAPV-IRES

Chain AK

uL1