IL_6P5J_240

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGGUUACCCAUC*GUAAGGCUU

Length

22 nucleotides

Bulged bases

6P5J|1|1|U|6426, 6P5J|1|1|U|6430, 6P5J|1|1|A|6431, 6P5J|1|1|C|6432, 6P5J|1|1|A|6469, 6P5J|1|1|G|6472

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|1|A|6425
6P5J|1|1|U|6426
6P5J|1|1|G|6427
6P5J|1|1|G|6428
6P5J|1|1|U|6429
6P5J|1|1|U|6430
6P5J|1|1|A|6431
6P5J|1|1|C|6432
6P5J|1|1|C|6433
6P5J|1|1|C|6434
6P5J|1|1|A|6435
6P5J|1|1|U|6436
6P5J|1|1|C|6437
*
6P5J|1|1|G|6467
6P5J|1|1|U|6468
6P5J|1|1|A|6469
6P5J|1|1|A|6470
6P5J|1|1|G|6471
6P5J|1|1|G|6472
6P5J|1|1|C|6473
6P5J|1|1|U|6474
6P5J|1|1|U|6475

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AK

uL1