IL_6P5J_241

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCCC*GGGUGAGGAG

Length

15 nucleotides

Bulged bases

6P5J|1|1|U|6506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|1|U|6492
6P5J|1|1|G|6493
6P5J|1|1|C|6494
6P5J|1|1|C|6495
6P5J|1|1|C|6496
*
6P5J|1|1|G|6503
6P5J|1|1|G|6504
6P5J|1|1|G|6505
6P5J|1|1|U|6506
6P5J|1|1|G|6507
6P5J|1|1|A|6508
6P5J|1|1|G|6509
6P5J|1|1|G|6510
6P5J|1|1|A|6511
6P5J|1|1|G|6512

Current chains

Chain 1

IAPV-IRES

Nearby chains

Chain G

uS7