IL_6P5J_243

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAC*GUUUUC

Length

11 nucleotides

Bulged bases

6P5J|1|2|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_243 not in the Motif Atlas

Geometric match to IL_6CZR_167

Geometric discrepancy: 0.2533

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6P5J|1|2|G|923
6P5J|1|2|G|924
6P5J|1|2|G|925
6P5J|1|2|A|926
6P5J|1|2|C|927
*
6P5J|1|2|G|1014
6P5J|1|2|U|1015
6P5J|1|2|U|1016
6P5J|1|2|U|1017
6P5J|1|2|U|1018
6P5J|1|2|C|1019

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

uS15

Chain X

uS8

Chain c

eS27