IL_6P5J_253

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCCUACCC*GGUAACC

Length

17 nucleotides

Bulged bases

6P5J|1|2|A|1580, 6P5J|1|2|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|2|G|1550
6P5J|1|2|U|1551
6P5J|1|2|G|1552
6P5J|1|2|C|1553
6P5J|1|2|C|1554
6P5J|1|2|U|1555
6P5J|1|2|A|1556
6P5J|1|2|C|1557
6P5J|1|2|C|1558
6P5J|1|2|C|1559
*
6P5J|1|2|G|1576
6P5J|1|2|G|1577
6P5J|1|2|U|1578
6P5J|1|2|A|1579
6P5J|1|2|A|1580
6P5J|1|2|C|1581
6P5J|1|2|C|1582

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

uS3

Chain L

eS10

Chain R

uS9

Chain U

eS19

Chain V

uS10

Chain e

eS29