IL_6P5J_256

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

6P5J|1|5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_256 not in the Motif Atlas

Homologous match to IL_8P9A_232

Geometric discrepancy: 0.1396

The information below is about IL_8P9A_232

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6P5J|1|5|A|12
6P5J|1|5|U|13
6P5J|1|5|C|14
*
6P5J|1|8|G|143
6P5J|1|8|U|144

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain AG

eL8

Chain AN

eL15

Chain AX

eL23