IL_6P5J_262

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

6P5J|1|5|A|943, 6P5J|1|5|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6P5J_262 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.1935

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6P5J|1|5|A|723
6P5J|1|5|C|724
*
6P5J|1|5|G|942
6P5J|1|5|A|943
6P5J|1|5|A|944
6P5J|1|5|U|945

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AC

uL4

Chain AF

uL30