IL_6P5J_264

3D structure

PDB id

6P5J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACCGCUGGGGCG*CGCCCCGGGCGGGU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6P5J|1|5|A|1095
6P5J|1|5|C|1096
6P5J|1|5|C|1097
6P5J|1|5|G|1098
6P5J|1|5|C|1099
6P5J|1|5|U|1100
6P5J|1|5|G|1168
6P5J|1|5|G|1169
6P5J|1|5|G|1170
6P5J|1|5|G|1171
6P5J|1|5|C|1172
6P5J|1|5|G|1173
*
6P5J|1|5|C|1188
6P5J|1|5|G|1189
6P5J|1|5|C|1190
6P5J|1|5|C|1191
6P5J|1|5|C|1192
6P5J|1|5|C|1193
6P5J|1|5|G|1194
6P5J|1|5|G|1195
6P5J|1|5|G|1196
6P5J|1|5|C|1197
6P5J|1|5|G|1198
6P5J|1|5|G|1199
6P5J|1|5|G|1200
6P5J|1|5|U|1201

Current chains

Chain 5

28S rRNA

Nearby chains

Chain AD

uL18

Chain AS

eL20

Chain AT

eL21