IL_6P5J_270
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGAGAGGUGUAGAAUAAGUG*CACUACUCUGAUCG
- Length
- 36 nucleotides
- Bulged bases
- 6P5J|1|5|A|3965, 6P5J|1|5|C|4064
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|C|3948
6P5J|1|5|A|3949
6P5J|1|5|U|3950
6P5J|1|5|G|3951
6P5J|1|5|A|3952
6P5J|1|5|G|3953
6P5J|1|5|A|3954
6P5J|1|5|G|3955
6P5J|1|5|G|3956
6P5J|1|5|U|3957
6P5J|1|5|G|3958
6P5J|1|5|U|3959
6P5J|1|5|A|3960
6P5J|1|5|G|3961
6P5J|1|5|A|3962
6P5J|1|5|A|3963
6P5J|1|5|U|3964
6P5J|1|5|A|3965
6P5J|1|5|A|3966
6P5J|1|5|G|3967
6P5J|1|5|U|3968
6P5J|1|5|G|3969
*
6P5J|1|5|C|4052
6P5J|1|5|A|4053
6P5J|1|5|C|4054
6P5J|1|5|U|4055
6P5J|1|5|A|4056
6P5J|1|5|C|4057
6P5J|1|5|U|4058
6P5J|1|5|C|4059
6P5J|1|5|U|4060
6P5J|1|5|G|4061
6P5J|1|5|A|4062
6P5J|1|5|U|4063
6P5J|1|5|C|4064
6P5J|1|5|G|4065
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 1
- IAPV-IRES
- Chain AK
- uL1
- Chain Ai
- eL36
Coloring options: