Loop IL_6P5J

3D structure

PDB id: 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

Loop

Sequence: CAUGAGAGGUGUAGAAUAAGUGGGAG*CGCCGGUGAAAUACCACUACUCUGAUCG
Length: 54 nucleotides
Bulged bases: 6P5J|1|5|A|4046, 6P5J|1|5|C|4064
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6P5J|1|5|C|3948
6P5J|1|5|A|3949
6P5J|1|5|U|3950
6P5J|1|5|G|3951
6P5J|1|5|A|3952
6P5J|1|5|G|3953
6P5J|1|5|A|3954
6P5J|1|5|G|3955
6P5J|1|5|G|3956
6P5J|1|5|U|3957
6P5J|1|5|G|3958
6P5J|1|5|U|3959
6P5J|1|5|A|3960
6P5J|1|5|G|3961
6P5J|1|5|A|3962
6P5J|1|5|A|3963
6P5J|1|5|U|3964
6P5J|1|5|A|3965
6P5J|1|5|A|3966
6P5J|1|5|G|3967
6P5J|1|5|U|3968
6P5J|1|5|G|3969
6P5J|1|5|G|3970
6P5J|1|5|G|3971
6P5J|1|5|A|3972
6P5J|1|5|G|3973
*
6P5J|1|5|C|4038
6P5J|1|5|G|4039
6P5J|1|5|C|4040
6P5J|1|5|C|4041
6P5J|1|5|G|4042
6P5J|1|5|G|4043
6P5J|1|5|U|4044
6P5J|1|5|G|4045
6P5J|1|5|A|4046
6P5J|1|5|A|4047
6P5J|1|5|A|4048
6P5J|1|5|U|4049
6P5J|1|5|A|4050
6P5J|1|5|C|4051
6P5J|1|5|C|4052
6P5J|1|5|A|4053
6P5J|1|5|C|4054
6P5J|1|5|U|4055
6P5J|1|5|A|4056
6P5J|1|5|C|4057
6P5J|1|5|U|4058
6P5J|1|5|C|4059
6P5J|1|5|U|4060
6P5J|1|5|G|4061
6P5J|1|5|A|4062
6P5J|1|5|U|4063
6P5J|1|5|C|4064
6P5J|1|5|G|4065

Current chains

Chain 5: 28S rRNA

Nearby chains

Chain 1: IAPV-IRES
Chain AK: uL1
Chain Ai: eL36

IL_6P5J_271