IL_6P5J_272
3D structure
- PDB id
- 6P5J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a mammalian 80S ribosome in complex with the Israeli Acute Paralysis Virus IRES (Class 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGGGCGAGCCGGGCUCUCGCUUCUGGCGCCAAG*CGAC
- Length
- 38 nucleotides
- Bulged bases
- 6P5J|1|5|C|4116, 6P5J|1|5|U|4117, 6P5J|1|5|U|4118, 6P5J|1|5|C|4119, 6P5J|1|5|U|4120, 6P5J|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6P5J|1|5|G|4091
6P5J|1|5|G|4092
6P5J|1|5|G|4093
6P5J|1|5|G|4094
6P5J|1|5|G|4095
6P5J|1|5|C|4096
6P5J|1|5|G|4097
6P5J|1|5|A|4098
6P5J|1|5|G|4099
6P5J|1|5|C|4100
6P5J|1|5|C|4101
6P5J|1|5|G|4107
6P5J|1|5|G|4108
6P5J|1|5|G|4109
6P5J|1|5|C|4110
6P5J|1|5|U|4111
6P5J|1|5|C|4112
6P5J|1|5|U|4113
6P5J|1|5|C|4114
6P5J|1|5|G|4115
6P5J|1|5|C|4116
6P5J|1|5|U|4117
6P5J|1|5|U|4118
6P5J|1|5|C|4119
6P5J|1|5|U|4120
6P5J|1|5|G|4121
6P5J|1|5|G|4122
6P5J|1|5|C|4123
6P5J|1|5|G|4124
6P5J|1|5|C|4125
6P5J|1|5|C|4126
6P5J|1|5|A|4127
6P5J|1|5|A|4128
6P5J|1|5|G|4129
*
6P5J|1|5|C|4155
6P5J|1|5|G|4156
6P5J|1|5|A|4157
6P5J|1|5|C|4158
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- uL2
- Chain AG
- eL8
- Chain AX
- eL23
- Chain AZ
- eL27
- Chain Ac
- eL30
- Chain Ag
- eL34
- Chain Ap
- eL43
- Chain C
- eS1
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